Publikationen

2025

• Effortless Vision-Language Model Specialization in Histopathology without Annotation

  Qiu, J., Jain, N., Ammeling, J., Aubreville, M., & Breininger, K. (2025). Effortless Vision-Language Model Specialization in Histopathology without Annotation. In MICCAI Workshop on Computational Pathology with Multimodal Data (COMPAYL). Abgerufen von https://openreview.net/forum?id=pQDzXVeBja

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Aubreville, Marc

  • Abteilung/Einrichtung

    • FLAIR - Flensburg Artificial Intelligence Research

  • Profilbereich

    • Informatik und Gestaltung

  • Forschungsfeld

    • Data Science und Künstliche Intelligenz

  • Fachbereich

    • Fachbereich 3: Information und Kommunikation

  Filter Tags

  • 2025
  • Conference Paper
  • • Jingna Qiu
    • Nishanth Jain
    • Jonas Ammeling
    • Marc Aubreville
    • Katharina Breininger

• Histologic Dataset of Normal and Atypical Mitotic Figures on Human Breast Cancer (AMi-Br)

  Bertram, C. A. ", Weiss, V., Donovan, T. A., Banerjee, S., Conrad, T., Ammeling, J., … Aubreville, M. (2025). Histologic Dataset of Normal and Atypical Mitotic Figures on Human Breast Cancer (AMi-Br). In "Bildverarbeitung für die Medizin 2025" (S. 113–118). "Wiesbaden": "Springer Fachmedien Wiesbaden".

  Abstract

  anzeigen ▸

  "Assessment of the density of mitotic figures (MFs) in histologic tumor sections is an important prognostic marker for many tumor types, including breast cancer. Recently, it has been reported in multiple works that the quantity of MFs with an atypical morphology (atypical MFs, AMFs) might be an independent prognostic criterion for breast cancer. AMFs are an indicator of mutations in the genes regulating the cell cycle and can lead to aberrant chromosome constitution (aneuploidy) of the tumor cells. To facilitate further research on this topic using pattern recognition, we present the first ever publicly available dataset of atypical and normal MFs (AMi-Br). For this, we utilized two of the most popular MF datasets (MIDOG 2021 and TUPAC) and subclassified all MFs using a three expert majority vote. Our final dataset consists of 3,720 MFs, split into 832 AMFs (22.4\%) and 2,888 normal MFs (77.6\%) across all 223 tumor cases in the combined set. We provide baseline classification experiments to investigate the consistency of the dataset, using a Monte Carlo cross-validation and different strategies to combat class imbalance.We found an averaged balanced accuracy of up to 0.806 when using a patch-level data set split, and up to 0.713 when using a patient-level split."

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Banerjee, Sweta
    • Aubreville, Marc

  • Forschungsprojekt

    • (mu)ROMI: Robust and Accurate Multi-Tumor, Multi-Species, Multi-Laboratory and Multi-Scanner Mitosis Detection with Large-Scale Datasets and Artificial Intelligence

  • Abteilung/Einrichtung

    • FLAIR - Flensburg Artificial Intelligence Research
    • CIVU – Center for Interaction, Visualization and Usability

  • Profilbereich

    • Gesundheit und Life Sciences

  • Forschungsfeld

    • Digitale Transformation
    • Human-Computer-Interaction
    • Data Science und Künstliche Intelligenz

  • Fachbereich

    • Fachbereich 3: Information und Kommunikation

  Filter Tags

  • 2025
  • Conference Paper
  • • Christof Bertram
    • Viktoria Weiss
    • Taryn Donovan
    • Sweta Banerjee
    • Thomas Conrad
    • Jonas Ammeling
    • Robert Klopfleisch
    • Christopher Kaltenecker
    • Marc Aubreville

• Chromosome Mask-Conditioned Generative Inpainting for Atypical Mitosis Classification

  Banerjee, S., Weiss, V., Conrad, T., Donovan, T. A., Ammeling, J., Fick, R., … Aubreville, M. (2025). Chromosome Mask-Conditioned Generative Inpainting for Atypical Mitosis Classification. In Proceedings of the MICCAI Workshop on Computational Pathology (Bd. 316, S. 266–277). PMLR.

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Banerjee, Sweta
    • Aubreville, Marc

  • Forschungsprojekt

    • (mu)ROMI: Robust and Accurate Multi-Tumor, Multi-Species, Multi-Laboratory and Multi-Scanner Mitosis Detection with Large-Scale Datasets and Artificial Intelligence

  • Abteilung/Einrichtung

    • FLAIR - Flensburg Artificial Intelligence Research

  • Profilbereich

    • Informatik und Gestaltung

  • Forschungsfeld

    • Data Science und Künstliche Intelligenz

  • Fachbereich

    • Fachbereich 3: Information und Kommunikation

  Filter Tags

  • 2025
  • Conference Paper
  • • Sweta Banerjee
    • Viktoria Weiss
    • Thomas Conrad
    • Taryn Donovan
    • Jonas Ammeling
    • Rutger Fick
    • Jonas Utz
    • Robert Klopfleisch
    • Christopher Kaltenecker
    • Christof Bertram
    • Katharina Breininger
    • Marc Aubreville

• Is Self-supervision Enough?

  Ganz, J. ", Ammeling, J., Rosbach, E., Lausser, L., Bertram, C. A., Breininger, K., & Aubreville, M. (2025). Is Self-supervision Enough? In "Bildverarbeitung für die Medizin 2025" (S. 63–68). "Wiesbaden": "Springer Fachmedien Wiesbaden".

  Abstract

  anzeigen ▸

  "Foundation models (FMs), i.e., models trained on a vast amount of typically unlabeled data, have become popular and available recently for the domain of histopathology. The key idea is to extract semantically rich vectors from any input patch, allowing for the use of simple subsequent classification networks potentially reducing the required amounts of labeled data, and increasing domain robustness. In this work, we investigate to which degree this also holds for mitotic figure classification. Utilizing two popular public mitotic figure datasets, we compared linear probing of five publicly available FMs against models trained on ImageNet and a simple ResNet50 end-to-end-trained baseline. We found that the end-to-end-trained baseline outperformed all FM-based classifiers, regardless of the amount of data provided. Additionally, we did not observe the FM-based classifiers to be more robust against domain shifts, rendering both of the above assumptions incorrect."

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Aubreville, Marc

  • Forschungsprojekt

    • (mu)ROMI: Robust and Accurate Multi-Tumor, Multi-Species, Multi-Laboratory and Multi-Scanner Mitosis Detection with Large-Scale Datasets and Artificial Intelligence

  • Abteilung/Einrichtung

    • CIVU – Center for Interaction, Visualization and Usability
    • FLAIR - Flensburg Artificial Intelligence Research

  • Profilbereich

    • Gesundheit und Life Sciences

  • Forschungsfeld

    • Data Science und Künstliche Intelligenz

  • Fachbereich

    • Fachbereich 3: Information und Kommunikation

  Filter Tags

  • 2025
  • Conference Paper
  • • Jonathan Ganz
    • Jonas Ammeling
    • Emely Rosbach
    • Ludwig Lausser
    • Christof Bertram
    • Katharina Breininger
    • Marc Aubreville

• REACH: A Card-based Approach to Guide Research Engagement and Science Communication Methods

  Amidi, M., Horstmann, A. C., Mertineit, J. A., & Wallbaum, T. (2025). REACH: A Card-based Approach to Guide Research Engagement and Science Communication Methods. In Proceedings of the 2025 Mensch und Computer 2025 (S. 694–699).

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Amidi, Maryam
    • Wallbaum, Torben

  Filter Tags

  • 2025
  • Conference Paper
  • • Maryam Amidi
    • Aike Horstmann
    • Jana Mertineit
    • Torben Wallbaum

• The Political Economy of Green Hydrogen in Algeria

  Boukhatem, I., Blohm, M., & Oei, P.-Y. (2025). The Political Economy of Green Hydrogen in Algeria. Friedrich-Ebert-Stiftung. Abgerufen von https://collections.fes.de/publikationen/download/pdf/1927165

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Abteilung/Einrichtung

    • Wind Energy Technology Institute

  • Fachbereich

    • Fachbereich 2: Energy and Life Science

  Filter Tags

  • 2025
  • Report
  • • Imane Boukhatem
    • Marina Blohm
    • Pao-Yu Oei

• Open-Source Web Dashboard zur Simulation, Analyse und Bewertung von Wärmepumpen

  Fritz, M., Freißmann, J., & Tuschy, I. (2025). Open-Source Web Dashboard zur Simulation, Analyse und Bewertung von Wärmepumpen. In I. Weidlich, P. Vuthi, & C. Lange (Hrsg.), Tagungsband (2. Version) — 2. Konferenz der Norddeutschen Wärmeforschung: Gemeinsam die Wärmewende voranbringen. (S. 24–33). HafenCity Universität. http://doi.org/10.34712/142.68

  • Suche auf Google Scholar
  • DOI Verweis

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Fritz, Malte
    • Freißmann, Jonas
    • Tuschy, Ilja

  Filter Tags

  • 2025
  • Conference Paper
  • • Malte Fritz
    • Jonas Freißmann
    • Ilja Tuschy
    • Ingo Weidlich
    • Petrit Vuthi
    • Constantin Lange
  • • Wärmewende
    • Wärmeplanung
    • Fernwärmeversorgung
    • Energieplanung
    • Wärmeforschung
    • Wohngebäude

• Comprehensive Dataset of Coarse Tumor Annotations for The Cancer Genome Atlas Breast Invasive Carcinoma

  Banerjee, S., Bertram, C. A., Ammeling, J., Weiss, V., Conrad, T., Klopfleisch, R., … Aubreville, M. (2025). Comprehensive Dataset of Coarse Tumor Annotations for The Cancer Genome Atlas Breast Invasive Carcinoma. In Bildverarbeitung für die Medizin 2025 (S. 260–265). Wiesbaden: Springer Fachmedien Wiesbaden. http://doi.org/10.1007/978-3-658-47422-5_56

  Abstract

  anzeigen ▸

  Automated tumor segmentation of histologic images is crucial for the development of computer-assisted diagnostic workflows aiming at accurate prognostication. We present a dataset of coarse annotations of over 1,000 highresolution breast tumor images from The cancer genome atlas breast invasive carcinoma (TCGA-BRCA) repository, each annotated with binary segmentation masks that delineate coarse tumor areas. Additionally, a subset of 20 images includes fine-grained annotations, providing precise delineation of tumor boundaries beyond the broader outlines used in coarse annotations. Initial evaluations using U-Net and DeepLabv3 models show promising segmentation performance. On a held-out, coarsely annotated test set, U-Net achieved an average intersection over union (IoU) score of 0.795, while DeepLabv3 scored 0.783. On the finely annotated subset of this test set, U-Net reached an average IoU of 0.746, with DeepLabv3 slightly outperforming at 0.765. The public availability of this dataset aims to support research in automated tumor analysis, advancing diagnostic workflows and thereby ultimately improving breast cancer management.

  • Suche auf Google Scholar
  • DOI Verweis

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Banerjee, Sweta
    • Aubreville, Marc

  • Forschungsprojekt

    • (mu)ROMI: Robust and Accurate Multi-Tumor, Multi-Species, Multi-Laboratory and Multi-Scanner Mitosis Detection with Large-Scale Datasets and Artificial Intelligence

  • Abteilung/Einrichtung

    • CIVU – Center for Interaction, Visualization and Usability
    • FLAIR - Flensburg Artificial Intelligence Research

  • Profilbereich

    • Gesundheit und Life Sciences

  • Forschungsfeld

    • Data Science und Künstliche Intelligenz

  • Fachbereich

    • Fachbereich 3: Information und Kommunikation

  Filter Tags

  • 2025
  • Conference Paper
  • • Sweta Banerjee
    • Christof Bertram
    • Jonas Ammeling
    • Viktoria Weiss
    • Thomas Conrad
    • Robert Klopfleisch
    • Christopher Kaltenecker
    • Katharina Breininger
    • Marc Aubreville

• MeasureTip: Towards a Finger-Worn Measurement Device

  Olberding, S., & Wallbaum, T. (2025). MeasureTip: Towards a Finger-Worn Measurement Device. In Proceedings of the 2025 Mensch und Computer 2025 (S. 673–677).

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Wallbaum, Torben

  Filter Tags

  • 2025
  • Conference Paper
  • • Simon Olberding
    • Torben Wallbaum

• Vortrag: Extradimensionen und mikroskopische Schwarze Löcher

  Vest, A. (2025). Vortrag: Extradimensionen und mikroskopische Schwarze Löcher.

  • Suche auf Google Scholar

  Exportformate

  • BibTeX
  • EndNote X3 XML
  • EndNote 7 XML
  • EndNote tagged
  • RIS

  Weiterführende Links

  anzeigen ▸

  • Personenseiten

    • Vest, Anja

  • Fachbereich

    • Fachbereich 2: Energy and Life Science

  Filter Tags

  • 2025
  • Miscellaneous
  • • Anja Vest